Nov 24, 20 1 parallel spectral clustering in distributed systems wenyen chen,yangqiu song,hongjie bai,chihjen lin,edward y. Spectral clustering introduction to learning and analysis of big data kontorovich and sabato bgu lecture 18 1 14. Parallel spectral clustering algorithm based on hadoop chapter 1 introduction 1. Parallel kmeans clustering of remote sensing images based.
Accurate spectral clustering for community detection in mapreduce serafeim tsironis. The experimental results demonstrate that the proposed algorithm can scale well and efficiently process large datasets on commodity hardware. Section 2 introduces the spectral clustering and co clustering algorithms. In addition, the paper detail map and reduce functions by pseudocodes, and the reports of performance based on the experiments are given. Parallel spectral clustering in distributed techylib. Parallel kmeans clustering of remote sensing images based on. Learning spectral clustering neural information processing. Spectral clustering spectral clustering spectral clustering methods are attractive. Chang abstract spectral clustering algorithm has been shown to be more effective in. Spectral clustering summary algorithms that cluster points using eigenvectors of matrices derived from the data useful in hard nonconvex clustering problems obtain data representation in the lowdimensional space that can be easily clustered variety of methods that use eigenvectors of unnormalized or normalized.
Sparse kernel spectral clustering models for largescale data analysis. Spectral clustering algorithms inevitable exist computational time and memory use problems for largescale spectral clustering, owing to computeintensive and dataintensive. We are expecting to present a highly optimized parallel implemention of all the steps of spectral clustering. Spectral clustering is a broad class of clustering procedures in which an intractable combinatorial optimization formulation of clustering is relaxed into a tractable eigenvector problem, and in which the relaxed so. In section 3 we will give a set of experiments, followed by the conclusions and discussions in section 4. It is based on userspecified map and reduce functions. In order to deal with the problem, many researchers try to design efficient parallel clustering algorithms. Research open access efficient parallel spectral clustering. Then, centroids are calculated by the weighted average of the points within a cluster. However, i have one problem i have a set of unseen points not present in the training set and would like to cluster these based on the centroids derived by kmeans step 5 in the paper. Abstract spectral clustering is one of the most popular cluster ing approaches. Parallel implementation of fuzzy clustering algorithm based on mapreduce computing model of hadoop a detailed survey jerril mathson mathew m. An efficient mapreducebased parallel clustering algorithm. Accurate spectral clustering for community detection in.
However,spectral clustering suffers from a scalability problem in both memory use and computational time when the size of a data. However, spectral clustering algorithms are not ef. Using tools from matrix perturbation theory, we analyze the algorithm, and give conditions under which it can be expected to do well. University at buffalo the state university of new york. Pdf spectral clustering is widely used in data mining, machine. Using spectral clustering to identify key elements on the topview image of a location. Parallel spectral clustering wenyen chen, yangqiu song, hongjie bai, chihjen lin, edward y. The resulting cluster quality is better than that of kmeans. Spectral clustering, random walks and markov chains spectral clustering spectral clustering refers to a class of clustering methods that approximate the problem of partitioning nodes in a weighted graph as eigenvalue problems. Pdf parallel spectral clustering in distributed systems. Using tools from matrix perturbation theory, we analyze the algorithm, and give conditions under which it.
The base spectral clustering algorithm should be able to perform such task, but given the integration specifications of weka framework, you have to express you problem in terms of pointtopoint distance, so it is not so easy to encode a graph. The weighted graph represents a similarity matrix between the objects associated with the nodes in the graph. Our parallel implementation, which we call parallel spectral clustering psc, provides a systematic solution to handle challenges from calculating the similarity matrix to ef. Parallel spectral clustering algorithm based on hadoop arxiv. Chang abstract spectral clustering algorithms have been shown to be more effective in. Efficient parallel spectral clustering algorithm design. Spectral clustering with two views ucsd cognitive science.
Easy to implement, reasonably fast especially for sparse data sets up to several thousands. Disco is based on coclustering which unlike clustering attempts to cluster both samples and items at once. Parallel spectral clustering in distributed systems citeseerx. Combined method for e ective clustering based on parallel. The parallel environment was assisted by the current approaches to processing images depend on. These works implemented the parallel affinity propagation algorithm on the memoryshared, gpu and mapreduce parallel architectures. Efficient parallel spectral clustering algorithm design for large data sets under cloud computing environment. Research article an efficient mapreducebased parallel clustering algorithm for distributed traffic subarea division dawenxia, 1,2 binfengwang, 1 yantaoli, 1 zhuoborong, 1 andzilizhang 1,3 school of computer and information science, southwest university, chongqing, china. The experimental results demonstrate that the proposed algorithm can scale well and. Large scale spectral clustering with landmarkbased.
Pdf designing an efficient parallel spectral clustering algorithm on. We propose using matlab distributed computing server to parallel construct similarity matrix, whilst using tnearest neighbors approach to reduce memory use. In this work, three wellknown clustering algorithms namely, kmeans, spectral and dbscan are. Parallel particle swarm optimization clustering algorithm based on mapreduce methodology. The proposed method, asc, is compared to the classical spectral clustering and two stateoftheart accelerating methods, i. A new agglomerative hierarchical clustering algorithm implementation based on the map reduce framework. The algorithm is mainly divided into two steps defined by the framework of map reduce, and they are detailed by pseudocodes. Topological mapping using spectral clustering and classi. International journal of digital content technology and its applications. W e begin by analyzing 1 the traditional method of sparsifying the similarity matrix and 2 the nystrom approximation. Models for spectral clustering and their applications thesis directed by professor andrew knyazev abstract in this dissertation the concept of spectral clustering will be examined. In this paper, we present a simple spectral clustering algorithm that can be implemented using a few lines of matlab. Spectral clustering, the eigenvalue problem we begin by extending the labeling over the reals z i.
However, spectral clustering suffers from a scalability problem in both memory use and computational time when a dataset size is large. Combined method for e ective clustering based on parallel som and spectral clustering luk a s voj a cek, jan martinovi c, kate rina slaninov a, pavla dr a zdilov a, and ji r dvorsky department of computer science, fei, vsb technical university of ostrava, 17. In section 4, we present our parallel spectral clustering algorithm and we mark some technical issues and our contributions to the problem. Spectral clustering has been successfully applied on large graphs by first identifying their community structure, and then clustering communities. An analysis of mapreduce efficiency in document clustering. This model requires customized map reduce functions, allowing users to parallel processing in two stages. The initialization algorithm to decrease the number of iterations is combined with the mapreduce framework. Parallel implementation of fuzzy clustering algorithm based. Request pdf on oct 1, 2015, chunwei tsai and others published parallel black hole clustering based on mapreduce find, read and cite all the research you need on researchgate. If you wish to publish any work based on pspectralclustering, please. This tutorial is set up as a selfcontained introduction to spectral clustering.
Large scale spectral clustering with landmarkbased representation xinlei chen deng cai. Spectral clustering treats the data clustering as a graph partitioning problem without make any assumption on the form of the data clusters. In recent years, spectral clustering has become one of the most popular modern clustering algorithms. In this paper, we propose a parallel kmeans clustering algorithm based on mapreduce. The choice of implementing an algorithms by dividing it into map and reduce parts is problematic. Online spectral clustering on network streams by yi jia submitted to the graduate degree program in electrical engineering and computer science and the graduate faculty of the university of kansas in partial ful. Parallel kmeans clustering based on mapreduce ucsb.
We will start by discussing biclustering of images via spectral clustering and give a justi cation. Pdf spectral clustering algorithms have been shown to be more effective in finding clusters than some traditional algorithms, such as. This is a relaxation of the binary labeling problem but one that we need in order to arrive at an eigenvalue problem. Clustering is a common technique, in all areas where information is obtained from the collected data. In order to improve the efficiency of spatial clustering for large scale data, many researchers proposed several efficient clustering algorithms in parallel. Spectral clustering algorithm has been shown to be more effective in finding clusters than. Parallel swarm intelligence strategies for largescale. Parallel kmeans clustering of remote sensing images based on mapreduce 163 kmeans, however, is considerable, and the execution is timeconsuming and memoryconsuming especially when both the size of input images and the number of expected classifications are large. Pdf the kmeans clustering is a basic method in analyzing rs remote. Paper presented a capable parallel clustering algorithm in a topperformance cluster environment.
Parallel spectral clustering algorithm design based on hadoop in the standard serial spectral clustering algorithms, we know that algorithm computational complexity is mainly presented in the construction of similar matrix, calculation of k minimum feature vectors in laplace matrix and kmeans the clustering. This algorithm can capture multiple interests of user shared within a cluster. Parallel spectral clustering algorithm for largescale. Spectral clustering is closely related to nonlinear dimensionality reduction, and dimension reduction techniques such as locallylinear embedding can be used to reduce errors from noise or outliers. Parallel swarm intelligence strategies for largescale clustering based on mapreduce with application to epigenetics of aging. Section 3 describes our parallel spectral clustering. Efficient parallel spectral clustering algorithm design for. Parallel spectral clustering algorithm based on hadoop.
Models for spectral clustering and their applications thesis directed by professor andrew knyazev. In this paper, we consider a complementary approach, providing a general. Spectral clustering involves using the fiedler vector to create a. Parallel isodata clustering of remote sensing images based on. In order to run this program you will need to install numpy.
Different with traditional ways, in this paper we try to parallel this algorithm on hadoop. An improved spectral clustering algorithm based on local. Parallel clustering algorithm for largescale biological data sets. Tech student college of engineering kidangoor kerala, india lekshmy p chandran assistant professor college of engineering kidangoor kerala, india abstract clustering is regarded as one of the. A map function generates a set of intermediate keyvalue pairs. Parallel isodata clustering of remote sensing images based. Parallel kmeans clustering of remote sensing images based on mapreduce. Pdf parallel kmeans clustering of remote sensing images. These solutions which paper 11 presented are based on. Parallel implementation of fuzzy clustering algorithm based on mapreduce computing model of hadoop a detailed survey. Models for spectral clustering and their applications. An efficient mapreduce based parallel clustering algorithm for distributed traffic subarea division dawenxia, 1,2 binfengwang, 1 yantaoli, 1 zhuoborong, 1 andzilizhang 1,3 school of computer and information science, southwest university, chongqing, china school of information engineering, guizhou minzu university, guiyang, china.
Their algorithm randomly selects initial k objects as centroids. Ultimately, we present clustering time, clustering quality and clustering accuracy in the experiments. Spectral clustering, which exploit pairwise similarities of data instances, has been widely used in several areas such as image segmentation and community detection, because of its effectiveness to. This article first introduced the parallel spectral clustering algorithm research background and significance, and then to hadoop the cloud computing framework. The eigenvalue decomposition procedure has the virtue of reducing dimensionality for kmeans. Research article an efficient mapreducebased parallel. However, spectral clustering suffers from a scalability problem in both memory use and. Parallel spectral clustering in distributed systems. We observed that the execution of kmeans can be divided into two parts.
Parallel particle swarm optimization clustering algorithm. Spectral clustering algorithm has been shown to be more effective in finding clusters than most traditional algorithms. We use parpack as underlying eigenvalue decomposition package and f2c to compile fortran code. Efficient parallel spectral clustering algorithm design for large data. How to choose a clustering method for a given problem.
Spectral clustering summary algorithms that cluster points using eigenvectors of matrices derived from the data useful in hard nonconvex clustering problems obtain data representation in the lowdimensional space that can be easily clustered variety of methods that use eigenvectors of. I am using spectral clustering method to cluster my data. The algorithm is parallelized using the mapreduce paradigm outlining how the map and reduce primitives are implemented. Specifically, in par3pkm, the incremental combiner function is executed between the map tasks and the reduce tasks.
To improve the efficiency of this algorithm, many variants have been developed. Different with the former studies, we propose in this paper to parallel isodata clustering algorithm on map reduce, another parallel programming model that is very easy to use. Objects with matching spectral values, without any formal knowledge, are. This paper combines the spectral clustering with mapreduce. In this work, based on a mapreduce framework, the timeconsuming iterations of the proposed par3pkm algorithm are performed in three phases with the map function, the combiner function, and the reduce function, and the parallel computing process of mapreduce is shown in figure 4. Combined method for e ective clustering based on parallel som. In this paper, we propose a parallel kmeans clustering algorithm based on mapreduce, which is a simple yet powerful parallel programming technique. Several recent papers have considered ways to alleviate this burden by incorporating prior knowledge into the metric, either in the setting of kmeans clustering 1, 2 or spectral clustering 3, 4. Then the programming model mapreduce and a platform hadoop are briefly introduced. Accurate spectral clustering for community detection in mapreduce. Spectral clustering treats the data clustering as a graph partitioning problem without.
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